BEAST Software - Bayesian Evolutionary Analysis Sampling Trees
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed …
First Tutorial | BEAST Documentation
Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download and …
Frequently Asked Questions | BEAST Documentation
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed …
Downloading and installing BEAST on UNIX/Linux
Downloading and installing BEAST on UNIX/Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.
Installing BEAST | BEAST Documentation
Installing BEAST BEAST has been developed in Java, which allows the same code to run on any platform that has the Java software installed. We have also created packages for each of the …
FigTree | BEAST Documentation
FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.
Estimating rates and dates from time-stamped sequences | BEAST ...
To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero (i.e. the …
BEAST XML Reference | BEAST Documentation
Glossary BEAST XML Reference XML BEAST XML Elements The following is a list of valid elements in a beast file. <adaptableSizeFastMatrixParameter>element Returns a …
Downloading and installing BEAST on Windows
Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.
The evolutionary dynamics of a influenza epidemic | BEAST …
This tutorial provides a step-by-step explanation on how to reconstruct the evolutionary dynamics of influenza based on a set of virus sequences which have been isolated at different points in time …